10月15日研究人員宣布,,對(duì)15種生物實(shí)驗(yàn)室常用小鼠品系的基因組測(cè)序計(jì)劃完成,發(fā)現(xiàn)了大約八百三十萬個(gè)單核苷酸多肽性(single nucleotide polymorphisms,,SNPs),。研究結(jié)果目前已經(jīng)免費(fèi)向讀者開放,成為研究環(huán)境因素引發(fā)疾病的機(jī)制的寶貴資源,。
單核苷酸多肽性是指DNA序列內(nèi)部的單個(gè)堿基變化,。因?yàn)樾∈蠛腿祟愒S多基礎(chǔ)生物學(xué)和行為學(xué)過程都很相似,比如基因功能,,因此這些數(shù)據(jù)有助于研究人類對(duì)帕金森氏癥,、癌癥,、糖尿病、心臟病,、肺部疾病,、生殖系統(tǒng)疾病、哮喘等200多種疾病的易感性,,這些疾病都受到接觸的環(huán)境物質(zhì)的影響,。
“面向研究團(tuán)體免費(fèi)開放這些有價(jià)值的數(shù)據(jù),是一個(gè)重大的里程碑,,” 美國(guó)國(guó)家環(huán)境衛(wèi)生研究中心(National Institute of Environmental Health Sciences ,,NIEHS)主任David A. Schwartz博士說。“每個(gè)小鼠品系都有其遺傳特異性?,F(xiàn)在我們弄清了這些小鼠品系的DNA差異,,可以將患有某種遺傳疾病的小鼠品系的基因組與其它沒有此疾病的小鼠品系的基因組對(duì)比,以用來弄清人類中的一些相似發(fā)病過程,,比如為何暴露于相同的環(huán)境下,,一些人容易發(fā)生某種疾病,而另一些人卻不會(huì),?
兩年前,,NIEHS的National Toxicology Program項(xiàng)目小組與加拿大Perlegen Sciences公司達(dá)成協(xié)議,啟動(dòng)“測(cè)序和SNP探索計(jì)劃”,。Perlegen研究人員利用2003年的C57BL/6J 小鼠品系(第一個(gè)經(jīng)過DNA測(cè)序的小鼠品系)DNA測(cè)序結(jié)果作為標(biāo)準(zhǔn)參照物,,對(duì)129S1/SvImJ、A/J,、AKR/J,、BALB/cByJ、BTBR T+ tf/J,、C3H/HeJ,、CAST/EiJ、 DBA/2J,、 FVB/NJ,、MOLF/EiJ、KK/HlJ,、NOD/LtJ,、NZW/LacJ、PWD/PhJ和WSB/EiJ等15個(gè)小鼠品系的DNA進(jìn)行分別測(cè)序,。這15個(gè)小鼠品系都是研究人員依據(jù)遺傳差異和實(shí)驗(yàn)室使用頻率精心篩選的,,測(cè)序技術(shù)是常用于尋找人類基因組DNA變異的高密度寡核苷酸微列陣技術(shù)(high-density oligonucleotide array technology)。
“Perlegen研究人員對(duì)從事這種科學(xué)工作非常興奮,,因?yàn)閺闹心軌颢@得很多寶貴子資源,。我們相信這些數(shù)據(jù)能夠提供許多復(fù)雜遺傳特征相關(guān)的信息,。”Perlegen Sciences公司遺傳部副主席Kelly Frazer說。
“研究人員對(duì)此計(jì)劃期望值很高?,F(xiàn)在,,我們走到計(jì)算機(jī)前,輕輕敲入我們想利用的小鼠品系名稱,,就可以查看此小鼠基因組序列差異,,將其與其它小鼠品系的進(jìn)行比對(duì)。”
北卡羅萊那大學(xué)小鼠疾病模型研究專家David Threadgill博士說,,“假如我們利用多個(gè)小鼠品系,,可以將動(dòng)物暴露于某種環(huán)境物質(zhì),然后查閱數(shù)據(jù),,對(duì)比患病的小鼠品系和非患病的小鼠品系遺傳差異,。這樣有助于我們尋找人類對(duì)某種疾病易感性不同的原因。
“這些小鼠數(shù)據(jù)將幫助我們弄清人類中的“相應(yīng)”基因,,導(dǎo)致對(duì)于某些疾病易感性的相應(yīng)分子和生理學(xué)途徑,,以及在易感人群引發(fā)疾病的環(huán)境病原體,”霍華德醫(yī)學(xué)院醫(yī)學(xué)教授,、職業(yè)病和流行病學(xué)教授David Christiani博士說這些數(shù)據(jù)對(duì)制藥公司來說也將是一筆巨大的信息資源,。
部分英文原文:
Mouse DNA To Aid Biomedical Research
Researchers announced today that they have successfully resequenced the DNA of 15 mouse strains most commonly used in biomedical research. More than 8.3 million single nucleotide polymorphisms (SNPs) were discovered among the genomes of the 15 mouse strains and the data are now publicly available. These new data will help researchers better understand complex genetic traits, such as why some individuals are more susceptible to certain diseases, and will serve as a valuable resource in determining how environmental agents influence the development of disease.
Single Nucleotide Polymorphisms, or SNPs (known as "snips"), are single genetic changes, or variations, that can occur within a DNA sequence. Because mice and humans share many of the same fundamental biological and behavioral processes, including gene functions, these data will help researchers understand human genetic susceptibility to almost 200 diseases such as Parkinson, cancer, diabetes, heart and lung diseases, reproductive diseases, and asthma and other childhood diseases, which are affected by exposure to environmental substances.